Welcome to Q-HCC

The objective of this project is to provide a baseline for performing multi-modal data classification on a novel open multimodal dataset of hepatocellular carcinoma (HCC).

To learn more about the models and how to run them yourself, see the models page.

To learn more about the data and how to download it, see the data page.

Quickstart

Our example notebook shows how you can download the dataset from heiData.

Online

You can run our example notebook online without installing anything on your computer.

• Google Colab

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  Open In Colab

  (Google account required)

• Binder

  ---

  Open in Binder

Locally

Alternatively you can run it on your computer.

First clone the repository using git:

git clone https://github.com/ssciwr/QHCC
cd QHCC

Then install the required Python libraries and launch JupyterLab:

pipcondamicromamba

pip install -r requirements.txt
jupyter lab notebooks/example.ipynb

conda env create -f environment.yml
conda activate QHCC
jupyter lab notebooks/example.ipynb

micromamba env create -f environment.yml
micromamba activate QHCC
jupyter lab notebooks/example.ipynb