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Models

Example models and data are provided at github.com/ZhaoWenzhao/QHCC.

In order to run the provided example scripts, you will need to use Python 3.8 or 3.9, and install the required Python libraries.

pip & requirements.txt

You can do this with pip, by first downloading requirements.txt and then running:

pip install -r requirements.txt

conda & environment.yml

You could also use conda or micromamba, by first downloading environment.yml and then running:

conda env create -f environment.yml
conda activate QHCC
micromamba env create -f environment.yml
micromamba activate QHCC

direct pip/conda

Alternatively you can install the required Python libraries directly:

pip install jupyter numpy pandas pooch pyradiomics simpleitk scikit-learn xgboost
conda env create -n QHCC jupyter numpy pandas pooch python radiomics::pyradiomics simpleitk scikit-learn xgboost -c conda-forge -c radiomics
conda activate QHCC
micromamba env create -n QHCC jupyter numpy pandas pooch python radiomics::pyradiomics simpleitk scikit-learn xgboost -c conda-forge -c radiomics
micromamba activate QHCC