import sme

model = sme.open_example_model()
print(model)

<sme.Model>
  - name: 'Very Simple Model'
  - compartments:
     - Outside
     - Cell
     - Nucleus
  - membranes:
     - Outside <-> Cell
     - Cell <-> Nucleus

import matplotlib.pyplot as plt

plt.title(model.name)
plt.imshow(model.compartment_image[0, :])
plt.show()

import sme_contrib.plot as smeplot
from IPython.display import HTML

results = model.simulate(100, 10)
anim = smeplot.concentration_heatmap_animation(results, ["B_cell"])
HTML(anim.to_html5_video())

jupyter-slides-template¶

Display a cell with its output¶

Output can be plots or images¶

Or even videos¶

More information¶