jupyter-slides-template

• This is a web version of a Jupyter notebook RISE presentation
• It is automatically generated from this jupyter notebook
• Press Space or Right to move to the next page
• Press Shift+Space or Left to move to the previous page
• Press Escape to zoom out
• Make your own at github.com/ssciwr/jupyter-slides-template

Display a cell with its output

import sme

model = sme.open_example_model()
print(model)

<sme.Model>
  - name: 'Very Simple Model'
  - compartments:
     - Outside
     - Cell
     - Nucleus
  - membranes:
     - Outside <-> Cell
     - Cell <-> Nucleus

Output can be plots or images

import matplotlib.pyplot as plt

plt.title(model.name)
plt.imshow(model.compartment_image[0, :])
plt.show()

Or even videos

import sme_contrib.plot as smeplot
from IPython.display import HTML

results = model.simulate(100, 10)
anim = smeplot.concentration_heatmap_animation(results, ["B_cell"])
HTML(anim.to_html5_video())

More information

• https://medium.com/@mjspeck/presenting-code-using-jupyter-notebook-slides-a8a3c3b59d67
• https://www.blog.pythonlibrary.org/2018/09/25/creating-presentations-with-jupyter-notebook/
• https://rise.readthedocs.io/
• https://github.com/ssciwr/jupyter-slides-template